Academic Publications

For an up-to-date list, see Google Scholar

Yeast Synthetic Biology/Systems Biology/Genomics

J. E. Gallegos, N. R. Adames, M. F. Rogers, P. Kraikivski, A. Ibele, K. Nurzynski-Loth, E. Kudlow, T. M. Murali, J. J. Tyson, J. Peccoud. Genetic interactions derived from high-throughput phenotyping of 6589 yeast cell cycle mutants.NPJ Systems Biology and Applications. 2020; 6(11). doi.org/10.1038/s41540-020-0134-z

J. E. Gallegos, S. Hayrynen, N. Adames, J. Peccoud. Challenges and opportunities for strain verification by whole-genome sequencing.  Scientific Reports. 2020; 10(5873). doi.org/10.1038/s41598-020-62364-6

N. R. Adames, J. E. Gallegos, J Peccoud. Yeast genetic interaction screens in the age of CRISPR/Cas. Current Genetics.  65(2): 307-327. doi.org/10.1007/s00294-018-0887-8

Biohacking and Cyberbiosecurity

D. Kar, I. Ray, J. Gallegos, J. Peccoud, I. Ray. Synthesizing DNA molecules with identity-based digital signatures to prevent malicious tampering and enabling source attribution. Journal of Computer Security. 2020, pre-press. doi.org/10.3233/JCS-191383

N. R. Adames, J. E. Gallegos, S. Y. Hunt, W. K. So, J. Peccoud. Hands-on introduction to syntheti biology or security professionals. Trends in Biotechnology. 2019; 37(11): 1143-1146. doi.org/10.1016/j.tibtech.2019.06.005

J. E. Gallegos, C. Boyer, E. Pauwels, W. Kaplan, J. Peccoud. The Open Insulin Project, a Case Study for “Biohacked” Medicines. Trends in Biotechnology. 2018; 36(12): 1211-1218. doi.org/10.1016/j.tibtech.2018.07.009

D. M. Kar, I. Ray, J. E. Gallegos, J. Peccoud. Digital Signatures to Ensure the Authenticity and Integrity of Synthetic DNA Molecules. Proceedings of the New Security Paradigms Workshop, 110-122

Peccoud, J. E. Gallegos, R. Murch, W. Buchholz, S. Raman. Cyberbiosecurity: from naïve trust to risk awareness. Trends in Biotechnology. 2018; 36(1): 4-7. doi.org/10.1016/j.tibtech.2017.10.012

Plant Biology and Biotechnology

J. E. Gallegos. Alternative Splicing Plays a Major Role in Plant Response to Cold Temperatures. The Plant Cell. 2018; Epub: doi.org/10.1105/tpc.18.00430

J. E. Gallegos. Autophagy: Both Friend and Foe in Pseudomonas syringae Infection. The Plant Cell. 2018; 30(3): 522-523. doi.org/10.1105/tpc.18.00203

J. E. Gallegos & A. B. Rose. Intron-mediated enhancement is not limited to introns. BioRXIV: doi.org/10.1101/269852

J. E. Gallegos & A. B. Rose. Intron DNA sequences can be more important than the proximal promoter in determining the site of transcript initiation. The Plant Cell. 2017; 29(4): 845-853. doi.org/10.1105/tpc.17.00020

J. E. Gallegos & A. B. Rose. The enduring mystery of intron-mediated enhancement. Plant Science. 2015; 237: 8-15. doi.org/10.1016/j.plantsci.2015.04.017